| |
bullseye |
tide-index |
tide-search |
comet |
percolator |
q-ranker |
barista |
search-for-xlinks |
spectral-counts |
|
MS1
|
in |
|
|
|
|
|
|
|
|
|
MS2
(sample) / CMS2
|
in/out |
|
in |
in |
in |
in |
in |
in |
in |
|
MGF
|
in/out |
|
in |
|
in |
in |
in |
in |
in |
|
mzML,
mzXML
|
in |
|
in |
in |
in |
in |
in |
in |
in |
|
Thermo .raw files
(Windows only)
|
in |
|
in |
in |
|
in |
in |
in |
in |
|
Other
proprietary vendor formats (Windows only)
|
|
|
in |
|
|
in |
in |
in |
in |
|
FASTA
(sample)
|
in |
in |
in |
in |
|
|
|
in |
|
|
database index
|
|
out |
in |
|
|
|
|
|
|
|
Tab-delimited text
(sample)
|
|
|
out |
out |
in/out |
in/out |
in/out |
out |
in/out |
|
pepXML
|
|
|
out |
out |
in/out |
out |
out |
|
in |
|
PIN
|
|
|
out |
|
in |
|
|
|
|
|
POUT
|
|
|
|
|
out |
|
|
|
|
|
mzIdentML
|
|
|
out |
out |
out |
|
|
|
in |
|
SQT
|
|
|
out |
out |
in |
in |
in |
|
in |
|
Feature file
|
|
|
|
|
in/out |
out |
|
|
|
|
Barista XML
|
|
|
|
|
|
|
out |
|
|
|
Crux parameters
(sample)
|
in/out |
in/out |
in/out |
in/out |
in/out |
in/out |
in/out |
in/out |
in/out |